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fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
 blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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@manzoorwanijk

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
@github-actions

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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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@manzoorwanijk

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
@github-actions

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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

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@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

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@manzoorwanijk

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
@github-actions

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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

Conversation

@manzoorwanijk

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A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
@github-actions

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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

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ContributorAuthor

Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Development

Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut
, 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })(); fix(arborist): apply overrides across a file:/workspace link boundary by manzoorwanijk · Pull Request #9671 · npm/cli · GitHub
Skip to content

fix(arborist): apply overrides across a file:/workspace link boundary - #9671

Merged
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link
Jun 26, 2026
Merged

fix(arborist): apply overrides across a file:/workspace link boundary#9671
owlstronaut merged 2 commits into
npm:latestfrom
manzoorwanijk:fix/override-across-file-link

Conversation

@manzoorwanijk

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Contributor

A root overrides entry targeting a transitive dependency was silently dropped when the path to that dependency crossed a file:/workspace link, so the dependency resolved to its un-overridden version and the lockfile pinned the wrong version. It reproduced under both the hoisted and linked install strategies, while the same override applied correctly when the dependency was reached without crossing a link.

Override rules propagate through dependency edges, but a Link and its target are not edge-connected, so they are bridged by forwarding the Link's OverrideSet to its target. That forwarding ran while the target's subtree was still unbuilt, so its guard found no matching rule and never forwarded, leaving the target and its descendant edges without the rule.

buildIdealTree now forwards a link's overrides to its target before the target's subtree is resolved, so descendant edges inherit the rule as they are added, matching how a registry node always inherits its ancestor's OverrideSet. loadActual now repropagates overrides through links once all edges are resolved, so a transitive override reached through a file: link is reported as overridden rather than invalid by npm ls.

References

Fixes#9659

…IdealTree
A root override for a transitive dep was dropped when the path to that dep crossed a file:/workspace link boundary, so the dep resolved to its un-overridden version. The link target's overrides were never forwarded before its subtree resolved. Forward them in #resolveLinks so descendant edges inherit the rule.
…Actual
A file: link target's subtree resolves late, so repropagating overrides before edges were resolved missed the transitive match and npm ls reported the overridden edge as invalid. Run repropagation once all edges are resolved.
@manzoorwanijk
manzoorwanijk marked this pull request as ready for review June 26, 2026 05:58
@manzoorwanijk
manzoorwanijk requested review from a team as code ownersJune 26, 2026 05:58
@owlstronaut
owlstronaut merged commit 968e42f into npm:latestJun 26, 2026
24 checks passed
@manzoorwanijk
manzoorwanijk deleted the fix/override-across-file-link branch June 26, 2026 13:30
@github-actions

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⚠️ Backport to release/v11 failed.

This usually means the cherry-pick had conflicts. Please create a manual backport:

git fetch origin release/v11
git checkout -b backport/v11/9671 origin/release/v11
git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
# resolve any conflicts, then:
git push origin backport/v11/9671
Error details
Command failed: git cherry-pick -x 968e42fbd62eb3a6f446466359c9431f41d76b2b
error: could not apply 968e42fbd... fix(arborist): apply overrides across a file:/workspace link boundary (#9671)
hint: After resolving the conflicts, mark them with
hint: "git add/rm <pathspec>", then run
hint: "git cherry-pick --continue".
hint: You can instead skip this commit with "git cherry-pick --skip".
hint: To abort and get back to the state before "git cherry-pick",
hint: run "git cherry-pick --abort".
hint: Disable this message with "git config set advice.mergeConflict false"

@github-actionsgithub-actionsBot mentioned this pull request Jun 25, 2026
@manzoorwanijk

Copy link
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ContributorAuthor

Creating a manual backport...

@manzoorwanijk

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ContributorAuthor

Here you go #9673

owlstronaut pushed a commit that referenced this pull request Jun 26, 2026
…v11) (#9673)
Backport of #9671 to `release/v11`.
A root `overrides` entry targeting a transitive dependency was silently
dropped when the path to that dependency crossed a `file:`/workspace
link, so the dependency resolved to its un-overridden version and the
lockfile pinned the wrong version. It reproduced under both the
`hoisted` and `linked` install strategies, while the same override
applied correctly when the dependency was reached without crossing a
link.
`buildIdealTree` now forwards a link's overrides to its target before
the target's subtree is resolved, so descendant edges inherit the rule
as they are added, matching how a registry node always inherits its
ancestor's `OverrideSet`. `loadActual` now repropagates overrides
through links once all edges are resolved, so a transitive override
reached through a `file:` link is reported as `overridden` rather than
`invalid` by `npm ls`.
Backport notes: clean cherry-pick except for the `#repropagateOverrides`
comment, which conflicted only because `release/v11` does not have the
adjacent `#applyPackageExtensions` method; resolved by keeping the v11
structure and applying the comment update.
## References
Fixes#9659
Backport of #9671
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Labels

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Development

Successfully merging this pull request may close these issues.

[BUG] overrides for a transitive dependency are dropped when it is reached through a file:/workspace link

2 participants

@manzoorwanijk@owlstronaut