Napari plugin allowing the user to edit pixel-level labels of histology images. Useful for refining semantic segmentation maps of tissue types or cell segments for use in downstream analyses like cSplotch/abcSplotch

Approximate Bayesian inference of spatial gene expression at cellular resolution, disentangling cell- or sample covariate-driven variation from tissue-specific effects

Control an Illumina HiSeq 2500 System

Workflow for reproducing main figures and results from SPACE-Tag manuscript

Pyseq 4i spatial pipeline

Links to repos for preprocessing of SPACE-Tag datasets and reproducing figures from the SPACE-Tag manuscript.

Snakemake workflow for preprocessing of SPACE-Tag raw data for downstream analysis