Welcome to omicverse!
omicverse is a community-built open-source ecosystem for omics data analysis in Python — from foundational I/O and reimagined algorithms to end-user interfaces. Everything you see below is open to contribution, whether you bring a new algorithm, a tutorial, or a port of an R package.
omicverse │ ┌─────────────────────────┬─────────────────┴─────────────┬────────────────────────────────┐ ToolsTutorialsAlgorithmsFoundations │ │ │ │ ┌─────┴─────┐ ┌──────┴──────┐ ┌────────────┼─────────────┐ │ │ │ │ │ │ │ │ │ omicverse-omicclawsingle_cell_yourIn-houseIntegratedR bridgesanndata-oomnotebooktutorialtutorialwelcome │ ┌──────┴──────┐ │ │ py-monocle2py-CellChat(planned)
In-house · original ML / DL methods — contributions welcome | Integrated · best-in-class methods unified under one API
Here's how to get started:
- 📖 Explore the documentation.
- 🎓 Walk through the tutorials.
- 📦 Install from PyPI or conda-forge.
- 📄 Read the paper in Nature Communications (2024).
- 🤝 Contribute an algorithm, a tutorial, or an R-to-Python port — open an issue or start a discussion.
- 🌐 Visit our website.