Inconsistency in API arguments for selecting genome builds

[ifokkema]

The variantvalidator API method supports GRCh37, GRCh38, hg19, hg38. The variantformatter API method allows for only GRCh37 and GRCh38.

• I assume that GRCh37 and hg19 are aliases and GRCh38 and hg38 as well, although GRCh37 and hg19 are apparently different in the MT sequence (according to the UCSC).
  • If they are not aliases, this should be documented, perhaps?
  • If they are aliases, fully treating them as such might speed up the application?
• It would be more logical to also allow for hg19/hg38 input in the variantformatter method as well.

[Peter-J-Freeman]

We can likely sort this as discussed in openvar/variantFormatter#9.

[Peter-J-Freeman]

This is now resolved. openvar/variantFormatter@7382c77

Getting there :)

[ifokkema]

Excellent, you're on fire! 🔥🔥🔥

[Peter-J-Freeman]

Couple more issues to resolve then on to making the LOVD endpoint for your approval sir!