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Develop - #798

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Peter-J-Freeman merged 13 commits into
vcf_cnvfrom
develop
Mar 27, 2026
Merged

Develop#798
Peter-J-Freeman merged 13 commits into
vcf_cnvfrom
develop

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@Peter-J-Freeman

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update LOVD CLI code to allow additional memory resource
remove csv tests in vcf conversion
updates to ensure delins intergenic is correctly handled in #786 part b
…drops

- Wrap execute() and execute_all() with retry (3 attempts)
- Reconnect on failure to recover from MySQL 2013 errors
- Improve logging of transient DB issues
- Preserve existing return format ['none', 'No data'] for compatibility
- Add safeguard for get_g_to_g_info missing parameters

Prevents pipeline crashes due to temporary DB connection loss
Update UCSC alts for GRCh38
@Peter-J-Freeman
Peter-J-Freeman merged commit 5c9aa84 into vcf_cnv Mar 27, 2026
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