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Final tweaks to the critical error bug catching code to provide detai… #813

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Merged
Peter-J-Freeman merged 1 commit into from
May 5, 2026
Merged

Final tweaks to the critical error bug catching code to provide detai… #813

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15 changes: 8 additions & 7 deletions VariantValidator/modules/vvMixinCore.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1621,13 +1621,14 @@ def _apply_met_variation(data):
# Bug catcher
except KeyboardInterrupt:
raise
except BaseException:
# Debug mode
exc_type, exc_value, last_traceback = sys.exc_info()
logger.error(f"Validation loop variant: {validation_loop_variant}")
logger.error(f"Structure loop variant: {validation_loop_variant}")
logger.critical(str(exc_type) + " " + str(exc_value))
raise fn.VariantValidatorError('Validation error')
except BaseException as e:
logger.error("Validation loop variant: %s", validation_loop_variant)
logger.error("Structure loop variant: %s", structure_loop_variant)
logger.critical(
"Unhandled validation failure",
exc_info=True,
)
raise fn.VariantValidatorError("Validation error") from e

def gene2transcripts(self, query, validator=False, bypass_web_searches=False, select_transcripts=None,
transcript_set="refseq", genome_build=None, batch_output=False, bypass_genomic_spans=False,
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