Develop - #829
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Old version does not discriminate between raw and all in select_transcripts field. This does not match VV anf VF processing and leads to slower responses when only latest transcript versions are required. Now, raw returns all transcripts at all versions and all returns all transcripts at latest versions. Closes issue #804
Certain alignments are too bad to justify keeping. The list in the file transcript_map_data.py can be used to filter mapping options, even if VVTA is updated and new rogue alignments are identified.
Ensembl transcripts with the same ID but requiring genome build info require additional handling
hdp.get_tx_for_gene has specific structures that need to be filtered out. This can be plugged into all other uses of hdp.get_tx_for_gene and adapted for other similar lists from hdp
Allows the API to optionally set the shorthand vcf format with a mod to the interface. The gui will keep the toggle switched on i.e. True. Also, range increased to 500 to allow capture or pretty much all vars in dbSNP
Known bad alignment
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