Ensure chrY is only pushed to AlTs in PAR regions when chrX is present - #844
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Previouly, VF pushed chrX to alts always. It hs now been updated to only push chrY to alts if chrX varianr is also present. Tests added and also warnings to help users
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## develop #844 +/- ##
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Coverage 76.32% 76.32%
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Files 37 37
Lines 13053 13054 +1
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+ Hits 9963 9964 +1
Misses 3090 3090 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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Previouly, VF pushed chrX to alts always. It hs now been updated to only
push chrY to alts if chrX varianr is also present. Tests added and also
warnings to help users