Defect/download failure fix - #371

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defect/downloadFailureFix
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Defect/download failure fix#371
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defect/downloadFailureFix

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@Azher2AliAzher2Ali commented Jul 13, 2023•
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As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)
These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.


99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.

@Azher2Ali
Azher2Ali requested a review from edsu7July 21, 2023 13:19
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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@edsu7edsu7Awaiting requested review from edsu7

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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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@edsu7edsu7Awaiting requested review from edsu7

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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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@edsu7edsu7Awaiting requested review from edsu7

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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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@edsu7edsu7Awaiting requested review from edsu7

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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
Defect/download failure fix - #371
Open
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Open
Defect/download failure fix#371
Azher2Ali wants to merge 3 commits into
developfrom 
defect/downloadFailureFix
Conversation
@Azher2Ali
@Azher2AliAzher2Ali
commented
Jul 13, 2023•

edited

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Contributor
As observed in local debugging by printing the debug logs, we found that the failures are occurring due to jdk incompatibility. (Adding error below for reference)

These errors are printing for each and every part and therefore the completion of the download is being interrupted at the end.

99% [##################################################] Parts: 130/131, Checksum: 82%, Write/sec: 0B/s, Read/sec: 0B/s 2023-07-14 02:34:14.735 ERROR 38112 --- [emory-cleaner-2] <img width="1633" alt="Screenshot 2023-07-14 at 12 30 06 PM" src="https://github.com/overture-stack/score/assets/121898125/a7ab2315-7da0-46fd-86e4-e3a64323b119">
b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
2023-07-14 02:34:15.192 INFO 38112 --- [ main] .MemoryMappedParallelPartObjectTransport : all tasks are submitted, waiting for completion...
2023-07-14 02:34:15.203 ERROR 38112 --- [emory-cleaner-0] b.o.s.c.t.MemoryMappedDataChannel : fail to unmap memory
java.lang.reflect.InaccessibleObjectException: Unable to make public void jdk.internal.ref.Cleaner.clean() accessible: module java.base does not "exports jdk.internal.ref" to unnamed module @270ddd98
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:340) ~[na:na]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:280) ~[na:na]
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:198) ~[na:na]
at java.base/java.lang.reflect.Method.setAccessible(Method.java:192) ~[na:na]
at bio.overture.score.client.transport.MemoryMappedDataChannel.commitToDisk(MemoryMappedDataChannel.java:113) ~[classes/:na]
at bio.overture.score.client.transport.MemoryMappedParallelPartObjectTransport$FreeMemory.run(MemoryMappedParallelPartObjectTransport.java:67) ~[classes/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:304) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]

We have made changes related to printing the values coming for each part and also modified the logging level to Debug to print more logs for identifying the issue in QA env.
@Azher2Ali
Azher2Ali
requested a review
from edsu7July 21, 2023 13:19
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@edsu7edsu7Awaiting requested review from edsu7

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