I'm a Bioinformatician at FGCZ – ETH Zurich, specializing in single-cell and spatial transcriptomics.
I support researchers across Switzerland with cutting-edge genomics technologies, including:
- Spatial platforms: 10x Xenium, VisiumHD, CosMx
- Single-cell: 10x Chromium, BD Rhapsody
- Analysis: Multi-omics integration, immune profiling, custom pipelines
🤖 spatial-scribe - Self-serve spatial-transcriptomics analysis, built with Claude: a guided wizard, an interactive spatial canvas, and plain-language questions take you from a raw Xenium/CosMx section to annotated cell types and a shareable report, with honest per-cell confidence.
⚡ rctd-py - GPU-accelerated RCTD for spatial transcriptomics.
📍 Spatial_transcriptomics_tools - A curated list of spatial transcriptomics analysis tools organized by category (segmentation, deconvolution, spatial domains, etc.)
📏 spatial-anno-metrics - Quality metrics for spatial cell-type annotation: internal validity, marker-program fidelity, deconvolution, and spatial signal QC.
I'm always happy to discuss single-cell, spatial biology, or AI/ML applications in genomics.
