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1. AD-mouse-splicing-workflowAD-mouse-splicing-workflowPublic

   Bioinformatics workflow for differential splicing analysis in Alzheimer's disease mouse models (Pandey et al. 2023, BMC Genomics)

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2. Brain-multiomics-pipelineBrain-multiomics-pipelinePublic

   Generalized DIA proteomics pipeline for mouse and human brain studies

   R 1

3. RNA-seq_AnalysisRNA-seq_AnalysisPublic

   Perform Analysis of Bulk-RNA seq data

   R

4. spatial_transcriptomicsspatial_transcriptomicsPublic

   End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis

   Jupyter Notebook

5. scrnaseq-retinal-pigment-epitheliumscrnaseq-retinal-pigment-epitheliumPublic

   Single-cell RNA-seq analysis — Pandey et al. 2022

   R 1

6. rnaseq-nextflow-awsrnaseq-nextflow-awsPublic

   End-to-end RNA-seq DESeq2 Nextflow pipeline on AWS for Alzheimer's disease transcriptomics

   R 1