Name		Name	Last commit message	Last commit date
.gitignore		.gitignore
Makefile		Makefile
README.md		README.md
SCRIPT.md		SCRIPT.md
est_rt.R		est_rt.R
fig_case_series.R		fig_case_series.R
fig_country_both_series.R		fig_country_both_series.R
fig_country_case_series.R		fig_country_case_series.R
fig_country_death_series.R		fig_country_death_series.R
gen_clean_epi_data.R		gen_clean_epi_data.R
gen_isos.R		gen_isos.R
gen_plot_elements.R		gen_plot_elements.R
local.makefile		local.makefile
sc_workflow.Rproj		sc_workflow.Rproj
template.R		template.R

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Overview

This project gets COVID-19 data and plots case incidence over time.

Detailed Steps

The Makefile performs a series of steps to get, clean, and plot the data using a series of steps in R.

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demonstration for CMMID software chatter session

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