[Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

Description

@rithwikshetty

This is an AI written issue based on a bug that I found while working on a project.

Before submitting

  • I searched existing issues and did not find a duplicate.
  • I included enough detail to reproduce or investigate the problem.

Area

apps/server

Summary

Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

Steps to reproduce

  1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
  2. Open that project in the desktop app (nightly), Claude provider.
  3. Type / in the composer.

Expected behavior

/deploy and /review appear in the autocomplete for that project.

Actual behavior

Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

Root cause

ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

// apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

Evidence

Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

probe cwdproject commands returned
/Users/me (= what the desktop app passes)none
/Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

The SDK finds them. It is just never asked in the right place.

And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject

The server sits in $HOME while its own session subprocesses sit in the project.

Suggested fix

  1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
  2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

Happy to test a nightly, and happy to put up a small PR if that is wanted.

Impact

Major degradation or frequent failure

Version or commit

0.0.29-nightly.20260727.920 (5719e8a)

Environment

macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

Workaround

Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

Related

#2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions

      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
       blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
      }
      } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
      })();
      (function(){
      try {
      var __m = "github.com";
      var __re = new RegExp('^' + "github\\.com" + '
      
      Skip to content

      [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

      Description

      @rithwikshetty

      This is an AI written issue based on a bug that I found while working on a project.

      Before submitting

      • I searched existing issues and did not find a duplicate.
      • I included enough detail to reproduce or investigate the problem.

      Area

      apps/server

      Summary

      Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

      The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

      This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

      Steps to reproduce

      1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
      2. Open that project in the desktop app (nightly), Claude provider.
      3. Type / in the composer.

      Expected behavior

      /deploy and /review appear in the autocomplete for that project.

      Actual behavior

      Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

      Root cause

      ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

      // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

      In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

      Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

      discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

      Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

      Evidence

      Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

      probe cwdproject commands returned
      /Users/me (= what the desktop app passes)none
      /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

      The SDK finds them. It is just never asked in the right place.

      And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

      pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
      pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
      pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
      

      The server sits in $HOME while its own session subprocesses sit in the project.

      Suggested fix

      1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
      2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

      Happy to test a nightly, and happy to put up a small PR if that is wanted.

      Impact

      Major degradation or frequent failure

      Version or commit

      0.0.29-nightly.20260727.920 (5719e8a)

      Environment

      macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

      Workaround

      Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

      Related

      #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

      Metadata

      Metadata

      Assignees

      No one assigned

        Labels

        No labels
        No labels

        Type

        No type

        Projects

        No projects

          Milestone

          No milestone

          Relationships

          None yet

          Development

          No branches or pull requests

          Issue actions

          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
          Skip to content

          [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

          Description

          @rithwikshetty

          This is an AI written issue based on a bug that I found while working on a project.

          Before submitting

          • I searched existing issues and did not find a duplicate.
          • I included enough detail to reproduce or investigate the problem.

          Area

          apps/server

          Summary

          Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

          The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

          This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

          Steps to reproduce

          1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
          2. Open that project in the desktop app (nightly), Claude provider.
          3. Type / in the composer.

          Expected behavior

          /deploy and /review appear in the autocomplete for that project.

          Actual behavior

          Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

          Root cause

          ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

          // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

          In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

          Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

          discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

          Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

          Evidence

          Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

          probe cwdproject commands returned
          /Users/me (= what the desktop app passes)none
          /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

          The SDK finds them. It is just never asked in the right place.

          And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

          pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
          pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
          pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
          

          The server sits in $HOME while its own session subprocesses sit in the project.

          Suggested fix

          1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
          2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

          Happy to test a nightly, and happy to put up a small PR if that is wanted.

          Impact

          Major degradation or frequent failure

          Version or commit

          0.0.29-nightly.20260727.920 (5719e8a)

          Environment

          macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

          Workaround

          Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

          Related

          #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

          Metadata

          Metadata

          Assignees

          No one assigned

            Labels

            No labels
            No labels

            Type

            No type

            Projects

            No projects

              Milestone

              No milestone

              Relationships

              None yet

              Development

              No branches or pull requests

              Issue actions

              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
              Skip to content

              [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

              Description

              @rithwikshetty

              This is an AI written issue based on a bug that I found while working on a project.

              Before submitting

              • I searched existing issues and did not find a duplicate.
              • I included enough detail to reproduce or investigate the problem.

              Area

              apps/server

              Summary

              Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

              The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

              This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

              Steps to reproduce

              1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
              2. Open that project in the desktop app (nightly), Claude provider.
              3. Type / in the composer.

              Expected behavior

              /deploy and /review appear in the autocomplete for that project.

              Actual behavior

              Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

              Root cause

              ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

              // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

              In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

              Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

              discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

              Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

              Evidence

              Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

              probe cwdproject commands returned
              /Users/me (= what the desktop app passes)none
              /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

              The SDK finds them. It is just never asked in the right place.

              And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

              pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
              pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
              pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
              

              The server sits in $HOME while its own session subprocesses sit in the project.

              Suggested fix

              1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
              2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

              Happy to test a nightly, and happy to put up a small PR if that is wanted.

              Impact

              Major degradation or frequent failure

              Version or commit

              0.0.29-nightly.20260727.920 (5719e8a)

              Environment

              macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

              Workaround

              Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

              Related

              #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

              Metadata

              Metadata

              Assignees

              No one assigned

                Labels

                No labels
                No labels

                Type

                No type

                Projects

                No projects

                  Milestone

                  No milestone

                  Relationships

                  None yet

                  Development

                  No branches or pull requests

                  Issue actions

                  , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
                  Skip to content

                  [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

                  Description

                  @rithwikshetty

                  This is an AI written issue based on a bug that I found while working on a project.

                  Before submitting

                  • I searched existing issues and did not find a duplicate.
                  • I included enough detail to reproduce or investigate the problem.

                  Area

                  apps/server

                  Summary

                  Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

                  The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

                  This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

                  Steps to reproduce

                  1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
                  2. Open that project in the desktop app (nightly), Claude provider.
                  3. Type / in the composer.

                  Expected behavior

                  /deploy and /review appear in the autocomplete for that project.

                  Actual behavior

                  Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

                  Root cause

                  ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

                  // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

                  In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

                  Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

                  discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

                  Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

                  Evidence

                  Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

                  probe cwdproject commands returned
                  /Users/me (= what the desktop app passes)none
                  /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

                  The SDK finds them. It is just never asked in the right place.

                  And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

                  pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
                  pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                  pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                  

                  The server sits in $HOME while its own session subprocesses sit in the project.

                  Suggested fix

                  1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
                  2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

                  Happy to test a nightly, and happy to put up a small PR if that is wanted.

                  Impact

                  Major degradation or frequent failure

                  Version or commit

                  0.0.29-nightly.20260727.920 (5719e8a)

                  Environment

                  macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

                  Workaround

                  Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

                  Related

                  #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

                  Metadata

                  Metadata

                  Assignees

                  No one assigned

                    Labels

                    No labels
                    No labels

                    Type

                    No type

                    Projects

                    No projects

                      Milestone

                      No milestone

                      Relationships

                      None yet

                      Development

                      No branches or pull requests

                      Issue actions

                      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                      Skip to content

                      [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

                      Description

                      @rithwikshetty

                      This is an AI written issue based on a bug that I found while working on a project.

                      Before submitting

                      • I searched existing issues and did not find a duplicate.
                      • I included enough detail to reproduce or investigate the problem.

                      Area

                      apps/server

                      Summary

                      Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

                      The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

                      This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

                      Steps to reproduce

                      1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
                      2. Open that project in the desktop app (nightly), Claude provider.
                      3. Type / in the composer.

                      Expected behavior

                      /deploy and /review appear in the autocomplete for that project.

                      Actual behavior

                      Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

                      Root cause

                      ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

                      // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

                      In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

                      Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

                      discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

                      Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

                      Evidence

                      Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

                      probe cwdproject commands returned
                      /Users/me (= what the desktop app passes)none
                      /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

                      The SDK finds them. It is just never asked in the right place.

                      And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

                      pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
                      pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                      pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                      

                      The server sits in $HOME while its own session subprocesses sit in the project.

                      Suggested fix

                      1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
                      2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

                      Happy to test a nightly, and happy to put up a small PR if that is wanted.

                      Impact

                      Major degradation or frequent failure

                      Version or commit

                      0.0.29-nightly.20260727.920 (5719e8a)

                      Environment

                      macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

                      Workaround

                      Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

                      Related

                      #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

                      Metadata

                      Metadata

                      Assignees

                      No one assigned

                        Labels

                        No labels
                        No labels

                        Type

                        No type

                        Projects

                        No projects

                          Milestone

                          No milestone

                          Relationships

                          None yet

                          Development

                          No branches or pull requests

                          Issue actions

                          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                          Skip to content

                          [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

                          Description

                          @rithwikshetty

                          This is an AI written issue based on a bug that I found while working on a project.

                          Before submitting

                          • I searched existing issues and did not find a duplicate.
                          • I included enough detail to reproduce or investigate the problem.

                          Area

                          apps/server

                          Summary

                          Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

                          The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

                          This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

                          Steps to reproduce

                          1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
                          2. Open that project in the desktop app (nightly), Claude provider.
                          3. Type / in the composer.

                          Expected behavior

                          /deploy and /review appear in the autocomplete for that project.

                          Actual behavior

                          Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

                          Root cause

                          ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

                          // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

                          In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

                          Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

                          discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

                          Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

                          Evidence

                          Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

                          probe cwdproject commands returned
                          /Users/me (= what the desktop app passes)none
                          /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

                          The SDK finds them. It is just never asked in the right place.

                          And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

                          pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
                          pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                          pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                          

                          The server sits in $HOME while its own session subprocesses sit in the project.

                          Suggested fix

                          1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
                          2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

                          Happy to test a nightly, and happy to put up a small PR if that is wanted.

                          Impact

                          Major degradation or frequent failure

                          Version or commit

                          0.0.29-nightly.20260727.920 (5719e8a)

                          Environment

                          macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

                          Workaround

                          Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

                          Related

                          #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

                          Metadata

                          Metadata

                          Assignees

                          No one assigned

                            Labels

                            No labels
                            No labels

                            Type

                            No type

                            Projects

                            No projects

                              Milestone

                              No milestone

                              Relationships

                              None yet

                              Development

                              No branches or pull requests

                              Issue actions

                              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
                              Skip to content

                              [Bug]: Project-level .claude/commands not discovered in desktop app — capability probe uses server cwd, not the project #4658

                              Description

                              @rithwikshetty

                              This is an AI written issue based on a bug that I found while working on a project.

                              Before submitting

                              • I searched existing issues and did not find a duplicate.
                              • I included enough detail to reproduce or investigate the problem.

                              Area

                              apps/server

                              Summary

                              Project-level slash commands in <project>/.claude/commands/*.md never appear in the / composer autocomplete when running the desktop app. Only user-level ~/.claude/commands and built-ins show, and the same list is shown for every project in the sidebar.

                              The commands themselves execute correctly if you type them blind, because thread sessions run in the project directory. Only discovery is broken.

                              This is the .claude/commands counterpart of #2048 (skills). #2048 was closed by #2124, which threaded ServerConfig.cwd into the probe — that fixes npx t3 launched from inside a repo, but ServerConfig.cwd is never the open project in the desktop app. #3040 is the Codex-side twin.

                              Steps to reproduce

                              1. Have a project with commands on disk, e.g. <project>/.claude/commands/deploy.md and review.md.
                              2. Open that project in the desktop app (nightly), Claude provider.
                              3. Type / in the composer.

                              Expected behavior

                              /deploy and /review appear in the autocomplete for that project.

                              Actual behavior

                              Only ~/.claude/commands entries and built-ins appear. Project commands are absent, for every project. Typing /deploy and sending it works fine.

                              Root cause

                              ClaudeDriver.ts takes the cwd for both the capability probe and skill discovery from the global ServerConfig, which is the server process's own working directory:

                              // apps/server/src/provider/Drivers/ClaudeDriver.ts:123const{ cwd }=yield*ServerConfig;// :159probeClaudeCapabilities(effectiveConfig,processEnv,cwd)// :165checkClaudeProviderStatus(effectiveConfig,()=>Cache.get(capabilitiesProbeCache,capabilitiesCacheKey),processEnv,cwd,)

                              In the desktop app that cwd is the user's home directory, not the open project. The probe options are otherwise correct — settingSources: ["user", "project", "local"] (ClaudeProvider.ts:569) — so the SDK would find the commands if it were given the right directory.

                              Discovery is also cached per provider instance with no project dimension, so switching projects cannot help even in principle: the in-memory Cache is capacity 1 / 5 min TTL (ClaudeDriver.ts:155), and the snapshot is persisted to <baseDir>/caches/<instanceId>.json and rehydrated on start with slashCommands included (providerStatusCache.ts:68, :91).

                              discoverClaudeSkills shares the same cwd (ClaudeSkills.ts:104 scans <cwd>/.claude/skills), which is why #2048 still reproduces on this build.

                              Thread sessions are unaffected — ClaudeAdapter.ts:3523-3527 passes the thread's own cwd plus the same setting sources, which is why manual invocation works.

                              Evidence

                              Running T3's own probe options (buildClaudeCapabilitiesProbeQueryOptions, verbatim: persistSession: false, settingSources: ["user","project","local"], allowedTools: [], mcpServers: {}, strictMcpConfig: true, never-yielding prompt) against two directories and reading initializationResult().commands:

                              probe cwdproject commands returned
                              /Users/me (= what the desktop app passes)none
                              /Users/me/dev/MyProjectannouncement, build, deploy, linear, prod-investigate, push, review

                              The SDK finds them. It is just never asked in the right place.

                              And the actual working directories of the running nightly (lsof -a -p <pid> -d cwd):

                              pid 51255 T3 server (app.asar/apps/server/dist/bin.mjs) cwd = /Users/me
                              pid 52756 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                              pid 75896 claude session, MyProject thread cwd = /Users/me/dev/MyProject
                              

                              The server sits in $HOME while its own session subprocesses sit in the project.

                              Suggested fix

                              1. Use the active project/worktree path for probeClaudeCapabilities and discoverClaudeSkills instead of ServerConfig.cwd.
                              2. Key both the in-memory probe cache and the on-disk snapshot by (instanceId, projectPath) rather than instance alone, and raise capacity above 1.

                              Happy to test a nightly, and happy to put up a small PR if that is wanted.

                              Impact

                              Major degradation or frequent failure

                              Version or commit

                              0.0.29-nightly.20260727.920 (5719e8a)

                              Environment

                              macOS 26.5.2 (25F84), desktop app (nightly), Claude provider, Claude Code CLI 2.1.220

                              Workaround

                              Type the command without autocomplete — it resolves and runs correctly. Alternatively launch the server from the project directory (t3 --cwd <project>), which does not generalise to multiple projects in the desktop app.

                              Related

                              #2048 (skills, closed by #2124 — same root cause, still reproduces), #3040 (Codex twin), #1329, #1283.

                              Metadata

                              Metadata

                              Assignees

                              No one assigned

                                Labels

                                No labels
                                No labels

                                Type

                                No type

                                Projects

                                No projects

                                  Milestone

                                  No milestone

                                  Relationships

                                  None yet

                                  Development

                                  No branches or pull requests

                                  Issue actions