Update package-builder to fix docker image publishing

[dbolotin]

Summary

• Update @platforma-sdk/package-builder from 3.11.4 to 3.11.6 to fix docker image publishing for virtual docker entrypoints (over-representation-analysis)
• Update @platforma-sdk/block-tools from 2.6.30 to 2.6.65
• Add changeset to trigger a software patch republish

Ref: milaboratory/platforma#1497

[gemini-code-assist]

Summary of Changes

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This pull request focuses on enhancing the reliability of Docker image publishing by updating a core package builder dependency. It also includes a significant update to the block tools package and a cascade of other dependency upgrades, ensuring the project leverages the latest stable versions of its internal libraries. The changes aim to improve the build process and overall system stability.

Highlights

• Package Builder Update: Updated @platforma-sdk/package-builder from 3.11.4 to 3.11.6 to resolve an issue with Docker image publishing for virtual Docker entrypoints, specifically over-representation-analysis.
• Block Tools Update: Upgraded @platforma-sdk/block-tools from 2.6.30 to 2.6.65, incorporating various dependency updates.
• Dependency Resolution Updates: Numerous other internal @milaboratories and @platforma-sdk dependencies were updated in pnpm-lock.yaml to their latest versions, ensuring compatibility and stability.
• Changelog Entry: Added a new changeset file to document these updates and trigger a necessary software patch republish.

Changelog

• .changeset/update-package-builder.md
  • Added a new changeset file to trigger a software patch republish.
• pnpm-lock.yaml
  • Updated @platforma-sdk/block-tools from 2.6.30 to 2.6.65.
  • Updated @platforma-sdk/package-builder from 3.11.4 to 3.11.6.
  • Updated @milaboratories/pl-model-common from 1.24.0 to 1.25.2.
  • Updated @milaboratories/pl-model-middle-layer from 1.10.0 to 1.12.10.
  • Updated @milaboratories/ts-helpers-oclif from 1.1.34 to 1.1.38.
  • Updated @milaboratories/ts-helpers from 1.6.0 to 1.7.3.
  • Updated @milaboratories/resolve-helper from 1.1.2 to 1.1.3.
  • Added new dependency entries for @milaboratories/helpers@1.13.6, @milaboratories/pl-error-like@1.12.9, @milaboratories/pl-http@1.2.4, @milaboratories/ptabler-expression-js@1.1.24, @platforma-open/milaboratories.software-ptabler.schema@1.13.17, @platforma-sdk/blocks-deps-updater@2.0.2, @platforma-sdk/model@1.58.11, and fast-json-patch@3.1.1.
• pnpm-workspace.yaml
  • Updated @platforma-sdk/block-tools from ~2.6.30 to ~2.6.65 in the catalog.
  • Updated @platforma-sdk/package-builder from ~3.11.4 to ~3.11.6 in the catalog.

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[gemini-code-assist]

Code Review

This pull request updates dependencies in the pnpm-lock.yaml and pnpm-workspace.yaml files to address a Docker image publishing issue. It also includes a changeset to trigger a software patch republish. The updates involve @platforma-sdk/package-builder, @platforma-sdk/block-tools, and other related packages. No specific issues were identified that require review comments based on the provided criteria.