App QA 2: Manhattan plot #289

Description

@jackparmer
  • Notice that these threshold lines are at different levels when the app loads. They shift downward
    image
    I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
  • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
  • Would be nice if these chromosomes were spaced out a bit:
    image
  • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
    image

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      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
       blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
      }
      } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
      })();
      (function(){
      try {
      var __m = "github.com";
      var __re = new RegExp('^' + "github\\.com" + '
      
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      App QA 2: Manhattan plot #289

      Description

      @jackparmer
      • Notice that these threshold lines are at different levels when the app loads. They shift downward
        image
        I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
      • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
      • Would be nice if these chromosomes were spaced out a bit:
        image
      • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
        image

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          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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          App QA 2: Manhattan plot #289

          Description

          @jackparmer
          • Notice that these threshold lines are at different levels when the app loads. They shift downward
            image
            I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
          • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
          • Would be nice if these chromosomes were spaced out a bit:
            image
          • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
            image

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              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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              App QA 2: Manhattan plot #289

              Description

              @jackparmer
              • Notice that these threshold lines are at different levels when the app loads. They shift downward
                image
                I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
              • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
              • Would be nice if these chromosomes were spaced out a bit:
                image
              • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
                image

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                  , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
                  Skip to content

                  App QA 2: Manhattan plot #289

                  Description

                  @jackparmer
                  • Notice that these threshold lines are at different levels when the app loads. They shift downward
                    image
                    I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
                  • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
                  • Would be nice if these chromosomes were spaced out a bit:
                    image
                  • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
                    image

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                    App QAUX/UI issues with gallery apps

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                      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                      Skip to content

                      App QA 2: Manhattan plot #289

                      Description

                      @jackparmer
                      • Notice that these threshold lines are at different levels when the app loads. They shift downward
                        image
                        I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
                      • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
                      • Would be nice if these chromosomes were spaced out a bit:
                        image
                      • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
                        image

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                        App QAUX/UI issues with gallery apps

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                          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                          Skip to content

                          App QA 2: Manhattan plot #289

                          Description

                          @jackparmer
                          • Notice that these threshold lines are at different levels when the app loads. They shift downward
                            image
                            I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
                          • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
                          • Would be nice if these chromosomes were spaced out a bit:
                            image
                          • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
                            image

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                            App QAUX/UI issues with gallery apps

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                            No projects

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                              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
                              Skip to content

                              App QA 2: Manhattan plot #289

                              Description

                              @jackparmer
                              • Notice that these threshold lines are at different levels when the app loads. They shift downward
                                image
                                I think the graph initial load values for these lines is different from the defaults set in the slider callbacks.. then the slider callbacks get called on Dash app load so shift downwards... Just a guess on what is going on
                              • Slider -> graph is still too slow to update... Taking 5 seconds. Can we use Dash clientside here? clientside callback interface dash#672 Can we use a much smaller dataset/graphs so that is doesn't take 5 seconds to redraw on? Would also be cool if we could put in a loading spinner on update
                              • Would be nice if these chromosomes were spaced out a bit:
                                image
                              • Autoscale is a bit weird. Can we limit the zoom-out upper bound? Probably don't also need these 2 axes lines:
                                image

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                                Labels

                                App QAUX/UI issues with gallery apps

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