Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

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@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
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}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

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@pmrvpmrv commented Jul 15, 2026

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Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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@pmrv@claude
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

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Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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2 participants

@pmrv@claude
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

Support pickling of calculators with Ctilde basis sets - #1

Merged
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke
Jul 15, 2026
Merged

Support pickling of calculators with Ctilde basis sets#1
pmrv merged 2 commits into
picklefrom
claude/pickle-ctilde-potentials-3f3gke

Conversation

@pmrv

@pmrvpmrv commented Jul 15, 2026

Copy link
Copy Markdown
Owner

Pull Request Template

Description of Changes

Extends the pickle support from the pickle branch (ICAMS#99) to calculators built from Ctilde potentials, not just B-basis ones.

  • PyACECalculator.__reduce__ previously always called self.basis.to_BBasisConfiguration(), which only exists on ACEBBasisSet, so pickling a calculator loaded from an .ace/.yace potential failed. The reducer now branches on the basis type: B-basis potentials are still dumped as a full BBasisConfiguration (portable across machines and directories), while ACECTildeBasisSet objects are passed through directly, relying on the native pickle support already present in their pybind11 bindings. Ctilde basis sets cannot be converted back to a B-basis representation, so a pass-through is the only option there.
  • Constructor kwargs (recursive_evaluator, recursive, gamma_lower_bound, etc.) are now preserved across the round trip via a module-level _unpickle_calculator helper, so e.g. a recursive Ctilde evaluator is restored as such instead of falling back to the defaults.
  • Drops the stale todict() state from the reduce tuple, which previously leaked the original basis_set parameter (e.g. a file name) into the unpickled instance's __dict__ (the pop result was discarded).

Checklist

  • Code is well-documented.
  • All tests have been run and passed.
  • Relevant documentation has been updated if necessary.

License Agreement

By submitting this pull request, I agree that:

  • The code submitted in this pull request will be distributed under the Academic Software License (free for academic non-commercial use, not free for commercial use), see LICENSE.md for more details.
  • The copyright for the code, including the submitted code, remains with Ruhr University Bochum. Ruhr University Bochum retains the right to transfer or modify the copyright.

🤖 Generated with Claude Code

https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J


Generated by Claude Code

ACECTildeBasisSet cannot be converted back to a BBasisConfiguration,
so the previous reducer failed for calculators loaded from .ace/.yace
potentials. Pass the Ctilde basis set through as is instead; its
pybind11 binding already provides native pickle support.
While at it, preserve the constructor kwargs (recursive_evaluator,
gamma bounds, etc.) across the pickle round trip via a module-level
helper, and drop the stale todict() state that previously leaked the
original basis_set parameter (e.g. a file name) into the unpickled
instance.
Add round-trip tests for B-basis, Ctilde and recursive Ctilde
calculators.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J

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also test .yace file from the tests direction

run a minimization of the dimer to test a few more forces/energies for consistency.

Address review: cover the Al-Ni .yace test potential and compare
energies/forces along a whole BFGS dimer minimization trajectory
between the original and the unpickled calculator.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BHj67uGNHN5bMH7LPoCR1J
@pmrv
pmrv merged commit 39f7d9f into pickleJul 15, 2026
1 check failed
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2 participants

@pmrv@claude