query <- scPredict(query, reference) ● Matching reference with new dataset... ─ 2000 features present in reference loadings ─ 6 features shared between reference and new dataset ─ 0.3% of features in the reference are present in new dataset Error in `GetAssayData()`: ! `assay` must be one of "RNA" or "integrated", not "data".

[seekning]

when i run this : query <- scPredict(query, reference)
● Matching reference with new dataset...
─ 2000 features present in reference loadings
─ 6 features shared between reference and new dataset
─ 0.3% of features in the reference are present in new dataset
Error in GetAssayData():
! assay must be one of "RNA" or "integrated", not "data".

anyone who know this ? god...no...please...

[anglixue]

Is this issue relevant to yours @zhaokunkun1
https://www.biostars.org/p/9583817/#9589971
I hope it helps with your scenario.

[rreggiar]

Just wanted to point out that @tfguinan has provided PR #27 as a fix to this that I can confirm works on my end.

For now, to install and avoid the clone + edit workflow suggested in the biostars link, install scPred with:

devtools::install_github(repo="powellgenomicslab/scPred", ref="9f407b7436f40d44224a5976a94cc6815c6e837f")

[seekning]

Is this issue relevant to yours @zhaokunkun1 https://www.biostars.org/p/9583817/#9589971 I hope it helps with your scenario.

thank u so much. i love you