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1. wgsflowwgsflowPublic

   Reliable Snakemake workflow for paired-end short-read WGS

   Python

2. DNA-Foundation-ModelsDNA-Foundation-ModelsPublic

   From Nucleotide Transformer embeddings to single-nucleotide genome annotation.

   Jupyter Notebook 1 1

3. kircherlab/HowToTrainDNNkircherlab/HowToTrainDNNPublic

   Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany

4. kircherlab/MPRAsnakeflowkircherlab/MPRAsnakeflowPublic

   With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

   Python 16 13

5. visze/sequence_cnn_modelsvisze/sequence_cnn_modelsPublic

   Python 13 2