QBiC (qbic-pipelines)

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1. rnadeseq rnadeseqPublic

   Differential gene expression analysis and pathway analysis of RNAseq data

   Nextflow 32 23

2. cellranger cellrangerPublic

   Nextflow pipeline wrapper for executing Cell Ranger

   Nextflow 13 2

3. vcftomaf vcftomafPublic

   Nextflow pipeline to convert VCF files into MAF files.

   Nextflow 10 7

4. t2pmhc t2pmhcPublic

   t2pmhc: A Structure-Informed Graph Neural Network for Predicting TCR–pMHC Binding

   Python 6 2

5. root-tissue-analysis root-tissue-analysisPublic

   Pipeline for pH analysis of A. thaliana root tissue

   Jupyter Notebook 4 1

6. icgc-featurecounts icgc-featurecountsPublic

   Forked from apeltzer/IGCG-featureCounts

   A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch

   Nextflow 3 3