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1. MPUSP/snakemake-bacterial-riboseqMPUSP/snakemake-bacterial-riboseqPublic

   Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

   Python 5

2. MPUSP/snakemake-ont-basecallingMPUSP/snakemake-ont-basecallingPublic

   A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

   Python 5

3. MPUSP/snakemake-bacterial-rnaseq-processingMPUSP/snakemake-bacterial-rnaseq-processingPublic

   A Snakemake workflow for the processing of short read rnaseq data in bacteria.

   Python 3

4. MPUSP/snakemake-assembly-postprocessingMPUSP/snakemake-assembly-postprocessingPublic

   A Snakemake workflow for the post-processing of microbial genome assemblies.

   Python 1

5. MPUSP/ignatov_et_al_2025MPUSP/ignatov_et_al_2025Public

   R scripts and source data to reproduce the primary results presented in the manuscript: Ignatov et al. (2024).

   R 1