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1. lorepylorepyPublic

   A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)

   Python 18 1

2. benchmark_microbiome_transformationsbenchmark_microbiome_transformationsPublic

   Forked from vllorens/benchmark_microbiome_transformations

   Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"

   R 8 1

3. omixer-rpmomixer-rpmPublic

   A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

   Java 27 8

4. GMMsGMMsPublic

   A manually curated database of human gut metabolic modules.

   19 5

5. QMPQMPPublic

   Quantitative Microbiome Profiling

   R 15 9

6. QMP-Microbiome-CRC-confoundersQMP-Microbiome-CRC-confoundersPublic

   Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"

   HTML 5