BranchesTags

Repository files navigation

Description

bs stands for BioScript.

BioScript is a python library aiming to regroup & run bioinformatics scripts through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts are displayed and used as a traditional form way.

The addition of new scripts does not require a high computational skills and is facilitated by the plugin system in the application. It is designed to be simple and fast.

Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API which mean that in practice, BioScript can be used and accessed from any web application.

Complexity of the application is hidden for end-users – who are running the scripts -, but if necessary, powerful features about job brokers and job processing are accessible. One other advantage of this application in terms of computing power management is to run scripts from different applications on a dedicated server with adapted features.

More documentation can be found on BBCF website.

This code was written by the BBCF http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch

About

BioScript is a web application which have the purpose to build a common interface for job processing.

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Repository files navigation
Description
bs stands for BioScript.
BioScript is a python library aiming to regroup & run bioinformatics scripts
through a common and a simple interface. It can be used from command line or as a web service. Bioinformatics scripts
are displayed and used as a traditional form way.
The addition of new scripts does not require a high computational skills and is facilitated
by the plugin system in the application. It is designed to be simple and fast.
Moreover, BioScript is built to be easily pluggable to any third party application, through a cross-domain Ajax API
which mean that in practice, BioScript can be used and accessed from any web application.
Complexity of the application is hidden for end-users – who are running the scripts -,
but if necessary, powerful features about job brokers and job processing are accessible.
One other advantage of this application in terms of computing power management
is to run scripts from different applications on a dedicated server with adapted features.
More documentation can be found on BBCF website.
This code was written by the BBCF
http://bbcf.epfl.ch/
webmaster.bbcf@epfl.ch
About
BioScript is a web application which have the purpose to build a common interface for job processing.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages