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1. paste pastePublic

   Probabilistic Alignment of Spatial Transcriptomics Experiments

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2. hotnet2 hotnet2Public

   HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

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3. THetA THetAPublic

   Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This re…

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4. GASTON GASTONPublic

   GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data

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5. hatchet hatchetPublic

   HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…

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6. CalicoST CalicoSTPublic

   Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics

   Python 50 4