RDP Staff

Collection of commonly used RDP Tools for easy building

RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.

TaxonomyTree building and traversal utility classes.

K-mer based sequence matching tool

Java filtering framework for sequence data

Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

Tools for finding (and removing) DNA/RNA primers in sequence reads.

Tools for kmer analysis.