REFRESH Bioinformatics Group

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1. KMCKMCPublic

   Fast and frugal disk based k-mer counter

   C++ 338 83

2. FAMSAFAMSAPublic

   Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

   C++ 270 33

3. colordcolordPublic

   A versatile compressor of third generation sequencing reads.

   C++ 53 15

4. kmer-dbkmer-dbPublic

   Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

   C++ 102 18

5. agcagcPublic

   Assembled Genomes Compressor

   C++ 186 19

6. vclustvclustPublic

   Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

   Python 110 5