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1. What_the_PhageWhat_the_PhagePublic

   WtP: Phage identification via nextflow and docker or singularity

   Nextflow 107 15

2. RVanDamme/MUFFINRVanDamme/MUFFINPublic

   hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis

   Nextflow 71 13

3. poreCovporeCovPublic

   SARS-CoV-2 workflow for nanopore sequence data

   Nextflow 42 18

4. docker_pipelinesdocker_pipelinesPublic

   Nextflow/Docker pipelines for "easy use"

   Nextflow 4 6

5. phiweger/clonepoolphiweger/clonepoolPublic

   Increased PCR screening capacity using a multi-replicate pooling scheme

   TeX 1

6. MPOAMPOAPublic

   Mask Pathogens for Outbreak Analysis

   Nextflow 3