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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About

Geant4 Spread-out Bragg peak demo

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Activity

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6 stars

Watchers

3 watching

Forks

2 forks
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
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Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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SOBP-demo
by Roy Keyes (roy.coding@gmail)
------
About:
------
SOBP-demo is a demo program that produces a spread-out Bragg peak from a proton beam in water. It is intended to be a very simple demo of Geant4 run on an Amazon EC2 server, displaying the result as a webpage, but can be run locally or on any server.
SOBP-Demo an be run on the public Geant4 AMI provided by the UNM PTG group for Amazon's EC2 service. Up to date version found here:
http://www.cs.unm.edu/~compmed/PTG/cloud.html
As of 15 June 2011: ami-50d62b39
- python-matplotlib must be installed (after you update the package list).
------
Usage:
------
Once compiled with "make", the demo program should be called as:
./sobp-demo.sh
The resulting plot will then be viewable with a webbrowser at
http://localhost
or http://127.0.0.1
or
the http address of the server on port 80.
Kill the webserver manually with Ctrl-C (or equivalent).
The results file is written out in CSV format and saved as SOBP-csv.txt.
SOBP-demo was develeped on Geant4.9.3 and tested on Geant4.9.4.
It also depends on Python and Matplotlib (Python plotting libary).
-----
Known issues (a.k.a. BUGS!!!)
-----
- The CSV output from command based scoring changed between 4.9.3 and 4.9.4, so this demo will break if you use it between those systems. You need to know which column will have the depth coordinated of the depth-dose curve:
4.9.3: column 2
4.9.4: column 1

About
Geant4 Spread-out Bragg peak demo
Resources
Readme
License
Activity
Stars
6 stars
Watchers
3 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages