samtools

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1. samtools samtoolsPublic

   Tools (written in C using htslib) for manipulating next-generation sequencing data

   C 1.9k 613

2. htslib htslibPublic

   C library for high-throughput sequencing data formats

   C 940 471

3. bcftools bcftoolsPublic

   This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

   C 882 273

4. hts-specs hts-specsPublic

   Specifications of SAM/BAM and related high-throughput sequencing file formats

   TeX 710 181

5. htsjdk htsjdkPublic

   A Java API for high-throughput sequencing data (HTS) formats.

   Java 302 240

6. tabix tabixPublic archive

   Note: tabix and bgzip binaries are now part of the HTSlib project.

   C 92 38