@schatzlab

schatzlab

Popular repositories Loading

  1. genomescope genomescopePublic

    Fast genome analysis from unassembled short reads

    JavaScript 325 66

  2. appliedgenomics2018 appliedgenomics2018Public

    Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook 80 31

  3. appliedgenomics2017 appliedgenomics2017Public

    JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML 59 14

  4. crossstitch crossstitchPublic

    Code for phasing SVs with SNPs

    Java 54 3

  5. appliedgenomics2021 appliedgenomics2021Public

    Materials for Spring 2021 Applied Genomics Course

    54 10

  6. pseudohaploid pseudohaploidPublic

    Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl 32 5

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
@schatzlab

schatzlab


Popular repositories
Loading
  1. 
genomescope
genomescopePublic
    
Fast genome analysis from unassembled short reads

    JavaScript
325

66

  2. 
appliedgenomics2018
appliedgenomics2018Public
    
Materials for Spring 2018 Applied Genomics Course

    Jupyter Notebook
80

31

  3. 
appliedgenomics2017
appliedgenomics2017Public
    
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

    HTML
59

14

  4. 
crossstitch
crossstitchPublic
    
Code for phasing SVs with SNPs

    Java
54

3

  5. 
appliedgenomics2021
appliedgenomics2021Public
    
Materials for Spring 2021 Applied Genomics Course

    
54

10

  6. 
pseudohaploid
pseudohaploidPublic
    
Create a pseudohaploid assembly from a partially resolved diploid assembly

    Perl
32

5


Repositories

Showing 10 of 39 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…