Scientific Computing at Uppsala University

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1. prophaser prophaserPublic

   Forked from kausmees/prophaser

   Imputation of genotype data based on the full probabilistic Li and Stephens model

   C++ 5 2

2. sbplib sbplibPublic

   Matlab library for prototyping Summation-by-parts finite-differences schemes. Mirror of https://bitbucket.org/sbpteam/sbplib/

   MATLAB 3 3

3. sesegpu sesegpuPublic

   Repository for SeSE course GPU programming for Machine Learning and Data Processing

   Jupyter Notebook 3 2

4. cannyfs cannyfsPublic

   Forked from cnettel/cannyfs

   A shim file system giving excellent throughput by assuming all I/O operations CAN complete successfully.

   C++

5. cnF2freq cnF2freqPublic

   Forked from cnettel/cnF2freq

   Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.

   C++

6. mpca mpcaPublic

   Forked from kausmees/mpca

   methods for handling missing data in PCA

   Python