Backport PR #3573 on branch 1.11.x (Add PIE and B lints)

[flying-sheep]

Backports #3573

[codecov]

Codecov Report

Attention: Patch coverage is 59.34066% with 74 lines in your changes missing coverage. Please review.

Please upload report for BASE (1.11.x@80edaf0). Learn more about missing BASE report.
Report is 39 commits behind head on 1.11.x.

✅ All tests successful. No failed tests found.

Files with missing lines	Patch %	Lines
src/scanpy/readwrite.py	90.16%	6 Missing ⚠️
src/scanpy/_utils/__init__.py	60.00%	4 Missing ⚠️
src/scanpy/external/tl/_phenograph.py	0.00%	4 Missing ⚠️
src/scanpy/queries/_queries.py	0.00%	4 Missing ⚠️
src/scanpy/external/pp/_magic.py	0.00%	3 Missing ⚠️
src/scanpy/tools/_sim.py	50.00%	3 Missing ⚠️
src/scanpy/external/exporting.py	0.00%	2 Missing ⚠️
src/scanpy/external/pl.py	0.00%	2 Missing ⚠️
src/scanpy/external/pp/_bbknn.py	0.00%	2 Missing ⚠️
src/scanpy/external/pp/_dca.py	0.00%	2 Missing ⚠️
... and 26 more

Additional details and impacted files

@@            Coverage Diff            @@
##             1.11.x    #3574   +/-   ##
=========================================
  Coverage          ?   75.40%           
=========================================
  Files             ?      113           
  Lines             ?    13188           
  Branches          ?        0           
=========================================
  Hits              ?     9944           
  Misses            ?     3244           
  Partials          ?        0           

Files with missing lines	Coverage Δ
src/scanpy/_compat.py	81.37% <100.00%> (ø)
src/scanpy/_version.py	100.00% <ø> (ø)
src/scanpy/cli.py	89.87% <100.00%> (ø)
...c/scanpy/experimental/pp/_highly_variable_genes.py	62.73% <ø> (ø)
src/scanpy/experimental/pp/_normalization.py	94.04% <ø> (ø)
src/scanpy/experimental/pp/_recipes.py	100.00% <100.00%> (ø)
src/scanpy/metrics/_common.py	91.25% <ø> (ø)
src/scanpy/plotting/_baseplot_class.py	88.92% <ø> (ø)
src/scanpy/plotting/_preprocessing.py	87.71% <ø> (ø)
src/scanpy/plotting/_tools/scatterplots.py	84.25% <100.00%> (ø)
... and 46 more