Link to the interoperability docs from the packages and learn pages - #263

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Closes#74.

Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.

@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson changed the title Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve

@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed the interoperability-links branch from 7a44774 to 0538c9eCompareAugust 23, 2026 17:48
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
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}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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Link to the interoperability docs from the packages and learn pages - #263
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interoperability-links
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Link to the interoperability docs from the packages and learn pages#263
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interoperability-links
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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Link to the interoperability docs from the packages and learn pages - #263
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Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
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Link to the interoperability docs from the packages and learn pages#263
Zethson wants to merge 5 commits into
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interoperability-links
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@Zethson
@ZethsonZethson
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Aug 23, 2026•

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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
@Zethson
Zethson
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Aug 23, 2026

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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
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interoperability-links
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7a44774 to
0538c9eCompareAugust 23, 2026 17:48
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Link to the interoperability docs from the packages and learn pages - #263
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Link to the interoperability docs from the packages and learn pages#263
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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
@Zethson
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Aug 23, 2026

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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Link to the interoperability docs from the packages and learn pages - #263
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Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
Open
Link to the interoperability docs from the packages and learn pages#263
Zethson wants to merge 5 commits into
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interoperability-links
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@Zethson
@ZethsonZethson
commented
Aug 23, 2026•

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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
@Zethson
Zethson
commented
Aug 23, 2026

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MemberAuthor
Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
the
interoperability-links
branch
from
7a44774 to
0538c9eCompareAugust 23, 2026 17:48
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Comment threadcontent/learn/_index.md
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Link to the interoperability docs from the packages and learn pages - #263
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Link to the interoperability docs from the packages and learn pages#263
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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
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Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Link to the interoperability docs from the packages and learn pages - #263
Open
Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
Open
Link to the interoperability docs from the packages and learn pages#263
Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
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@Zethson
@ZethsonZethson
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Aug 23, 2026•

edited

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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
@Zethson
Zethson
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Aug 23, 2026

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Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
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interoperability-links
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0538c9eCompareAugust 23, 2026 17:48
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Comment threadcontent/learn/_index.md
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
Link to the interoperability docs from the packages and learn pages - #263
Open
Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
Open
Link to the interoperability docs from the packages and learn pages#263
Zethson wants to merge 5 commits into
mainfrom 
interoperability-links
Conversation
@Zethson
@ZethsonZethson
commented
Aug 23, 2026•

edited

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Closes#74.
Adds an Interoperability link to each of the three data structure cards on the packages page, and one sentence in the Getting Started intro pointing at the same pages for AnnData, MuData, and SpatialData. Not added to the front page, and the mudata card's now-redundant Muon.jl chip is dropped.
@Zethson
Link to AnnData interoperability docs from packages and learn pages
98bd4a5
The packages page already claimed that building on common data structures ensures interoperability, without backing that claim with anything concrete.
The Getting Started intro never mentioned that scverse data is reachable outside Python at all.
Both now link to the AnnData interoperability page, which lists the R, Julia, JavaScript, and Rust implementations and is maintained upstream, so the list cannot go stale here.
Closes#74
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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✅ Deploy Preview for jade-cajeta-1bcca0 ready!
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🔨 Latest commit9697b6a
🔍 Latest deploy loghttps://app.netlify.com/projects/jade-cajeta-1bcca0/deploys/6a8d5489153dc50008890b8c
😎 Deploy Previewhttps://deploy-preview-263--jade-cajeta-1bcca0.netlify.app
📱 Preview on mobile
 Toggle QR Code... 

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@Zethson
Cover all three data structures consistently
ee8a5ef
The first pass only named AnnData, in a blurb that heads all three cards.
mudata and spatialdata gained interoperability pages of their own this month (scverse/mudata#189, scverse/spatialdata#1180), so each card now carries an Interoperability link and the section blurb no longer singles one format out.
The mudata card loses its Muon.jl chip: with a sibling Interoperability link that lists Muon.jl alongside the R options, a Julia-only chip reads as arbitrary.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@ZethsonZethson
changed the title
Link to AnnData interoperability docs from packages and learn pagesLink to the interoperability docs from the packages and learn pagesAug 23, 2026
@Zethson
Zethson
commented
Aug 23, 2026

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MemberAuthor
Should only be merged when the docs for both mudata and spatialdata have been rebuilt so that the URLs resolve
@Zethson
Point the spatialdata link at stable
0538c9e
Currently 404s because the interoperability page is not in a release yet; it resolves once the next spatialdata release ships.
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
@Zethson
Zethsonforce-pushed
the
interoperability-links
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from
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0538c9eCompareAugust 23, 2026 17:48
Zethson
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Aug 24, 2026
View reviewed changes
Comment threadcontent/learn/_index.md
Outdated

@ZethsonZethson
mentioned this pull request
Aug 28, 2026

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