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Unable to set vmin vmax when plotting vector data #324

Closed
#368
#346
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Unable to set vmin vmax when plotting vector data#324
#368
#346
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timtreismelonora
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bugSomething isn't workingshapes 🫧Anything related to Shapes
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v0.2.7

Description

@wangjiawen2013
wangjiawen2013
opened on Aug 16, 2024

Hi,
I want set the vmin and vmax of the color, but failed. This is the first method:

norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

The resulting plot is here:
image

This is the second method:
sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
The resulting plot is here:
image

vmin and vmax didn't work in both cases.

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Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
    Skip to content
    Unable to set vmin vmax when plotting vector data #324
    Closed
    #368
    #346
    Closed
    Unable to set vmin vmax when plotting vector data#324
    #368
    #346
    Assignees
    timtreismelonora
    Labels
    bugSomething isn't workingshapes 🫧Anything related to Shapes
    Milestone
    v0.2.7
    Description
    @wangjiawen2013
    wangjiawen2013
    opened on Aug 16, 2024
    Hi,
    
I want set the vmin and vmax of the color, but failed. This is the first method:
    norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

    The resulting plot is here:
    image
    This is the second method:
    sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
    
The resulting plot is here:
    image
    vmin and vmax didn't work in both cases.
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try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
      Skip to content
      Unable to set vmin vmax when plotting vector data #324
      Closed
      #368
      #346
      Closed
      Unable to set vmin vmax when plotting vector data#324
      #368
      #346
      Assignees
      timtreismelonora
      Labels
      bugSomething isn't workingshapes 🫧Anything related to Shapes
      Milestone
      v0.2.7
      Description
      @wangjiawen2013
      wangjiawen2013
      opened on Aug 16, 2024
      Hi,
      
I want set the vmin and vmax of the color, but failed. This is the first method:
      norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

      The resulting plot is here:
      image
      This is the second method:
      sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
      
The resulting plot is here:
      image
      vmin and vmax didn't work in both cases.
      Metadata
      Metadata
      Assignees
      Labels
      bugSomething isn't workingshapes 🫧Anything related to Shapes
      Type
      No type
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, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
        Skip to content
        Unable to set vmin vmax when plotting vector data #324
        Closed
        #368
        #346
        Closed
        Unable to set vmin vmax when plotting vector data#324
        #368
        #346
        Assignees
        timtreismelonora
        Labels
        bugSomething isn't workingshapes 🫧Anything related to Shapes
        Milestone
        v0.2.7
        Description
        @wangjiawen2013
        wangjiawen2013
        opened on Aug 16, 2024
        Hi,
        
I want set the vmin and vmax of the color, but failed. This is the first method:
        norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

        The resulting plot is here:
        image
        This is the second method:
        sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
        
The resulting plot is here:
        image
        vmin and vmax didn't work in both cases.
        Metadata
        Metadata
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        bugSomething isn't workingshapes 🫧Anything related to Shapes
        Type
        No type
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, 'i');
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
          Skip to content
          Unable to set vmin vmax when plotting vector data #324
          Closed
          #368
          #346
          Closed
          Unable to set vmin vmax when plotting vector data#324
          #368
          #346
          Assignees
          timtreismelonora
          Labels
          bugSomething isn't workingshapes 🫧Anything related to Shapes
          Milestone
          v0.2.7
          Description
          @wangjiawen2013
          wangjiawen2013
          opened on Aug 16, 2024
          Hi,
          
I want set the vmin and vmax of the color, but failed. This is the first method:
          norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

          The resulting plot is here:
          image
          This is the second method:
          sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
          
The resulting plot is here:
          image
          vmin and vmax didn't work in both cases.
          Metadata
          Metadata
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          Labels
          bugSomething isn't workingshapes 🫧Anything related to Shapes
          Type
          No type
          Projects
          No projects
            Milestone
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            None yet
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            No branches or pull requests
            Issue actions
            
, 'i');
if (__m === '*' || __re.test(location.href)) {
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
            Skip to content
            Unable to set vmin vmax when plotting vector data #324
            Closed
            #368
            #346
            Closed
            Unable to set vmin vmax when plotting vector data#324
            #368
            #346
            Assignees
            timtreismelonora
            Labels
            bugSomething isn't workingshapes 🫧Anything related to Shapes
            Milestone
            v0.2.7
            Description
            @wangjiawen2013
            wangjiawen2013
            opened on Aug 16, 2024
            Hi,
            
I want set the vmin and vmax of the color, but failed. This is the first method:
            norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

            The resulting plot is here:
            image
            This is the second method:
            sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
            
The resulting plot is here:
            image
            vmin and vmax didn't work in both cases.
            Metadata
            Metadata
            Assignees
            Labels
            bugSomething isn't workingshapes 🫧Anything related to Shapes
            Type
            No type
            Projects
            No projects
              Milestone
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              None yet
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              No branches or pull requests
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, 'i');
if (__m === '*' || __re.test(location.href)) {
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
              Skip to content
              Unable to set vmin vmax when plotting vector data #324
              Closed
              #368
              #346
              Closed
              Unable to set vmin vmax when plotting vector data#324
              #368
              #346
              Assignees
              timtreismelonora
              Labels
              bugSomething isn't workingshapes 🫧Anything related to Shapes
              Milestone
              v0.2.7
              Description
              @wangjiawen2013
              wangjiawen2013
              opened on Aug 16, 2024
              Hi,
              
I want set the vmin and vmax of the color, but failed. This is the first method:
              norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

              The resulting plot is here:
              image
              This is the second method:
              sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
              
The resulting plot is here:
              image
              vmin and vmax didn't work in both cases.
              Metadata
              Metadata
              Assignees
              Labels
              bugSomething isn't workingshapes 🫧Anything related to Shapes
              Type
              No type
              Projects
              No projects
                Milestone
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                None yet
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                No branches or pull requests
                Issue actions
                
, 'i');
if (__m === '*' || __re.test(location.href)) {
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} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
Unable to set vmin vmax when plotting vector data · Issue #324 · scverse/spatialdata-plot · GitHub
                Skip to content
                Unable to set vmin vmax when plotting vector data #324
                Closed
                #368
                #346
                Closed
                Unable to set vmin vmax when plotting vector data#324
                #368
                #346
                Assignees
                timtreismelonora
                Labels
                bugSomething isn't workingshapes 🫧Anything related to Shapes
                Milestone
                v0.2.7
                Description
                @wangjiawen2013
                wangjiawen2013
                opened on Aug 16, 2024
                Hi,
                
I want set the vmin and vmax of the color, but failed. This is the first method:
                norm = matplotlib.colors.Normalize(vmin=-1.0, vmax=0.4)
sdata.pl.render_shapes("cell_circles", norm=norm, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))

                The resulting plot is here:
                image
                This is the second method:
                sdata.pl.render_shapes("cell_circles", vmin=-1, vmax=1, color="NOTCH2", method="matplotlib").pl.show(coordinate_systems= "physical", figsize=(10,4))
                
The resulting plot is here:
                image
                vmin and vmax didn't work in both cases.
                Metadata
                Metadata
                Assignees
                Labels
                bugSomething isn't workingshapes 🫧Anything related to Shapes
                Type
                No type
                Projects
                No projects
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