Skip to content

docs(gallery): add normalization and contrast tutorial - #727

Open
timtreis wants to merge 1 commit into
mainfrom
docs/normalization-gallery
Open

docs(gallery): add normalization and contrast tutorial#727
timtreis wants to merge 1 commit into
mainfrom
docs/normalization-gallery

Conversation

@timtreis

Copy link
Copy Markdown
Member

Summary

Links the new Normalization and contrast tutorial into the docs gallery, mirroring the source notebook added in scverse/spatialdata-plot-tutorials#9.

  • adds a Tutorials card to docs/gallery.md
  • adds the thumbnail docs/_static/gallery/normalization_and_contrast.png (same image used in the notebooks repo)
  • bumps the docs/notebooks submodule to the branch carrying the tutorial so the page resolves

The tutorial covers the norm= argument end-to-end: fixed contrast limits, clip under/over vs clamp, LogNorm/PowerNorm/SymLogNorm, percentile contrast via PercentileNormalize, per-channel norm lists for images, and norms on shapes/points/labels.

Merge order

  1. Merge Add normalization and contrast tutorial spatialdata-plot-tutorials#9 first.
  2. Re-point the docs/notebooks submodule here to notebooks main (currently it references the feature-branch commit so this PR builds).

PercentileNormalize ships with the next spatialdata-plot release (#725, on main).

Link the new normalization_and_contrast tutorial into the gallery with its
thumbnail, and bump the docs/notebooks submodule to the branch carrying the
notebook.
The submodule pointer references the tutorial's feature branch; re-point to
notebooks main once scverse/spatialdata-plot-tutorials#9 merges.
@codecov-commenter

Copy link
Copy Markdown

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 79.20%. Comparing base (0919069) to head (7eb6062).

Additional details and impacted files
@@ Coverage Diff @@## main #727 +/- ##
=======================================
Coverage 79.20% 79.20% =======================================
Files 17 17 Lines 4563 4563 Branches 1026 1026 =======================================
Hits 3614 3614 Misses 599 599 Partials 350 350 
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@timtreis@codecov-commenter