Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

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riley-ball wants to merge 46 commits into
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
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Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

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No feedback attempt and no feedback marks lost.

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4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

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Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

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Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

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No feedback attempt and no feedback marks lost.

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Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

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Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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Collaborator

This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

Copy link
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Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Owner

Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

Copy link
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Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

Copy link
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No feedback attempt and no feedback marks lost.

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Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

Copy link
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Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Owner

Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Author

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

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Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

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Collaborator

No feedback attempt and no feedback marks lost.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

Projects

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Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

Copy link
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Collaborator

This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

Copy link
Copy Markdown
Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Owner

Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Author

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

Copy link
Copy Markdown
Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

Copy link
Copy Markdown
Collaborator

No feedback attempt and no feedback marks lost.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
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Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

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No feedback attempt and no feedback marks lost.

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4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

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This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

Copy link
Copy Markdown
Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

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Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

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Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

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No feedback attempt and no feedback marks lost.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
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Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915 - #155

Open
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition
Open

Improved U-Net for the ISIC 2018 Skin Lesion Segmentation Dataset - 45293915#155
riley-ball wants to merge 46 commits into
shakes76:topic-recognitionfrom
riley-ball:topic-recognition

Conversation

@riley-ball

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Copy Markdown

This repository contains the code for the Improved U-Net model for the ISIC 2018 Skin Lesion Segmentation dataset (https://challenge.isic-archive.com/data/#2018). Contains the following files:

  • “modules.py" containing the source code of the components of your model where each componented is implemented as functions
  • “dataset.py" containing the data loader for loading and preprocessing the data
  • “train.py" containing the source code for training, validating, testing and saving your model.
  • “predict.py" showing example usage of the trained model.

Riley Ball | 45293915

riley-balland others added 30 commits October 20, 2023 00:15
@wangzhaomxy

wangzhaomxy commented Nov 6, 2023

Copy link
Copy Markdown
Collaborator

This is an initial inspection, no action is required at this point

  • Well organized files.
  • Algorithm solves the problem appropriately. Average Dice Coefficient in testing dataset: 0.81. Very good output.
  • Correctly using TensorFlow to construct the Improved U-Net models and functions.
  • Good coding design.
  • Sufficient docstring and comment in the code.
  • Easy difficulty problem, no higher difficulty marks.

@shakes76shakes76 added the Extension Extension approved label Nov 20, 2023
@shakes76

Copy link
Copy Markdown
Owner

Marking

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem
Driver Script present
File structure present
Shows Usage & Demo & Visualisation & Data usage
Module present
Commenting
No Data leakage
Difficulty: Easy -10

Commit Log

Meaningful commit messages
Progressive commits used

Documentation

ReadMe acceptable, missing refs -1
Model/technical explanation
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in Correct Branch)
No Feedback required
Request Description good

@shakes76

Copy link
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Owner

Please revert changes to repo README files for merging, does not affect grade only merge.

@shakes76shakes76 added the question Further information is requested label Nov 20, 2023
@riley-ball

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Author

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

@wangzhaomxy

Copy link
Copy Markdown
Collaborator

Please revert changes to repo README files for merging, does not affect grade only merge.

Sorry a bit confused, which README file is this in relation to and which changes? (did I modify a README I wasn't supposed to or is this in relation to the README that documents my model?)

You shouldn't modify the original ReadMe.md files when you first fork Shakes' repository. All student-constructed folders/files, including your own Readme.md for your project, should be packed in one folder under the ‘recognition’ folder. So you need to recover the original README file and move your own readme file into your own folder.

@wangzhaomxy

Copy link
Copy Markdown
Collaborator

No feedback attempt and no feedback marks lost.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

ExtensionExtension approvedImproved UNetquestionFurther information is requested

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@riley-ball@wangzhaomxy@shakes76@nathasha-naranpanawa