ADNI_Brain_Visual_Transformer_47306725 - #182

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ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

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@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

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Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

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Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

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This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

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Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

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Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
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questionFurther information is requestedTransformer

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Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all \u003cpre\u003e\u003ccode\u003e blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks"); } } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); } })(); (function(){ try { var __m = "github.com"; var __re = new RegExp('^' + "github\\.com" + '
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ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
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Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

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Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

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Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

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Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
Copy Markdown
Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

Copy link
Copy Markdown
Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

Copy link
Copy Markdown
Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

Copy link
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Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length \u003e 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
Copy Markdown
Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

Copy link
Copy Markdown
Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

Copy link
Copy Markdown
Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

Copy link
Copy Markdown
Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

Copy link
Copy Markdown
Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

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i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

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Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

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This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

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Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

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Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
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questionFurther information is requestedTransformer

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Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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ADNI_Brain_Visual_Transformer_47306725 - #182

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ritikarana9999 wants to merge 27 commits into
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ritikarana9999:main
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ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

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@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
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Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

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Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

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Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

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Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
Copy Markdown
Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

Copy link
Copy Markdown
Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

Copy link
Copy Markdown
Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

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Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

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Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

ADNI_Brain_Visual_Transformer_47306725 - #182

Open
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main
Open

ADNI_Brain_Visual_Transformer_47306725#182
ritikarana9999 wants to merge 27 commits into
shakes76:mainfrom
ritikarana9999:main

Conversation

@ritikarana9999

@ritikarana9999ritikarana9999 commented Nov 12, 2023

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Pull Request: ADNI_Brain_Visual_Transformer_47306725 Readme

Summary:
This pull request aims to enhance the README documentation for the "ADNI_Brain_Visual_Transformer_47306725" project. The improvements include providing a more structured overview of the project, clarifying the Vision Transformer architecture, detailing the dataset, and addressing the challenges faced during model training. Additionally, the pull request incorporates suggestions for improving clarity and readability.

Additional Details:

  • The revised README is organized into clear sections, such as "Overview," "Vision Transformers," "Setting Parameters," "Build and Train the Model," and "Conclusion."

  • Detailed explanations have been added to sections like "Architecture of Vision Transformer," providing insights into the alterations made to the original Vision Transformer and how the model functions.

  • The "Training and Testing Process" section has been expanded to provide a comprehensive understanding of the experimentation process with different hyperparameters and the observed results from multiple models.

  • Suggestions for potential enhancements, such as considering a larger dataset or leveraging pre-trained models, have been included in the "Conclusion" section to guide future improvements.

Name: Ritika Rana
Student ID: 47306725

@ritikarana9999

Copy link
Copy Markdown
Author

i didn't get any feedback till now

@ritikarana9999ritikarana9999 changed the title Pattern recognition and analysis project ADNI_Brain_Visual_Transformer_47306725Nov 17, 2023
@shakes76

Copy link
Copy Markdown
Owner

Hi Ritika, this PR was created quite late (last week), even though I can see commits were on time. Tutor will look at this ASAP, but there may be penalties for late PR submission.

@LinfengLiu98

Copy link
Copy Markdown
Collaborator

This is an initial inspection, no action is required at this point

Difficulty: Hard

Readme:

  • Excellent

Commit messages:

  • Commit messages are too simple and mostly the same commit messages, needs more details
  • All commits are finished within two days
  • there are three screenshot of google colab commit logs

Code:

  • Uses Vision transformer
  • Code is submitted in one jupyter notebook
  • Code comments are okay
  • Good design

Functionality/Performance:

  • No patient-level split
  • Model is overfitting
  • Test ACC is 64.65% (higher than val ACC about 55%)
  • Applied data augmentation

General comments:
PR is in the main branch

  • Solves the problem appropriately although performance is poor
  • No patient-level split so the model is overfitting.
  • The code was submitted in one jupyter notebook which does meet the requirement. You will need to keep e.g. model, train, test, data preprocessing in separate files.
  • The validation loss is not decreasing and sometimes even increasing from the provided three models. There could be bugs in the code which lead the model not trained properly.
  • Another part needs to be pointed out is that your val ACC is lower than your test ACC which is unusual.
  • Also, why is your test set so small, we have provide a test set with 4500 images and your confusion matrix only show you used about 150 images.

@shakes76

shakes76 commented Nov 21, 2023

Copy link
Copy Markdown
Owner

Marking

Commits on time but late PR -4

Good Practice (Design/Commenting, TF/Torch Usage)

Adequate design and implementation, only as a notebook -2
Good spacing and comments
Header blocks missing -1

Recognition Problem

Solves problem, but has training/validation loss irregularities -1
Driver Script not present -1
File structure not present -2
Shows Usage & Demo & Visualisation & Data usage, didn't use all test images -1
Module present
Commenting minimal -1
No Data leakage, no patient level split -1
Difficulty: Hard

Commit Log

Meaningful commit messages sometimes -1
Progressive commits used over 2 days -1

Documentation

ReadMe acceptable/good, no usage -1
Model/technical explanation minimal -1
Good Description and Comments
Markdown used and PDF submitted

Pull Request

Successful Pull Request (Working Algorithm Delivered on Time in InCorrect Branch) -2
Feedback required, update PR to correct branch, move your README into folder and restore repo README -2
Request Description good

@shakes76shakes76 added the question Further information is requested label Nov 21, 2023
@shakes76

Copy link
Copy Markdown
Owner

Feedback marks possible +2 if the requested changes are made (see above).

creating files as described in the feedback
@wangzhaomxy

Copy link
Copy Markdown
Collaborator

Have some feedback attempts but was unsuccessful. So no feedback marks granted.

creating files as described in the feedback
creating files as described in the feedback
creating files as described in the feedback
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

questionFurther information is requestedTransformer

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants

@ritikarana9999@shakes76@LinfengLiu98@wangzhaomxy