add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

add --post option to split / split2 subcommands - #152

Open
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess
Open

add --post option to split / split2 subcommands#152
ocxtal wants to merge 1 commit into
shenwei356:masterfrom
ocxtal:split-postprocess

Conversation

@ocxtal

@ocxtalocxtal commented Jul 14, 2020

Copy link
Copy Markdown
Contributor

Hi Wei,

I wanted seqkit split / split2 subcommands to have an option to feed output to a shell command, just as implemented in GNU coreutils' split as --filter option (https://man7.org/linux/man-pages/man1/split.1.html).

What I did are:

  • added WopenPipe function in xopen (I haven't created PR yet: https://github.com/ocxtal/xopen/tree/wopenpipe)
  • added openWriter in helper.go, which opens pipe with WopenPipe if postprocessing command is nonempty.
  • modified writeSeqs in helper.go to use openWriter
  • modified calls to writeSeqs in split{2}.go to pass postprocessing command string
  • replaced calls to Wopen in split{2}.go to openWriter
  • added --post (-P) option to split{2}.go

However the patch is incomplete in the following points:

  • lacks tests for this new option (I tested it just worked. I didn't care about performance.)
  • might have compatibility problems around forking child process in WopenPipe

Since I'm not familiar with golang or unix processes, I'd like ask you to give any kind of comment on the patch. I'd also happy if you could take over and complete this work.

Thanks in advance,

Hajime Suzuki

@shenwei356

Copy link
Copy Markdown
Owner

Sounds useful. But I'm not familiar with sub-processes handling in golang either.

Someone suggested a similar feature in this or another repo, I think it's worth trying, when I have enough time.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

@ocxtal@shenwei356