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15 followers · 21 following
  • Washington State University
  • Spokane, Washington, US
  • 02:53 (UTC -07:00)

Achievements

Achievement: YOLOAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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siboles/README.md

👋 Hi, I'm Scott

I'm a Biomedical Engineer that researches orthopedic mechanics. I utilize computational modeling and simulation to explore these mechanics at the celluar, tissue, and joint (organ) scales. I have also developed tools to process, segment, and register 3-D images of articular cartilage obtained with laser scanning microscopy under varying mechanical conditions.

My expertise includes:

  • 🧬 Biomedical Engineering
  • 🐍 Python programming
  • 🏗️ Finite Element Analysis (FEA)
  • 📐 Computational Geometry
  • 📚 Continuum Mechanics
  • 📊 Data Science & Visualization
  • 🖼️ Image Processing, Segmentation, and Registration
  • 🎯 Numerical Optimization, Sensitivity Analysis, and Uncertainty Quantification

🚀 Featured Projects

  • pyfebio: A Python API for the FEBio finite element solver
  • seg2mesh: A toolkit for processing of segmentation images, conversion to triangle meshes, and mesh processing.
  • lsmgridtrack: A Python package for deformable image registration of 3-D laser scanned images and analysis in biomechanics.
  • resonant_lsm: Segmentation and deformation analysis of microscopic images obtained with resonance laser scanning
  • bioMultiScale: A Python package for automating multiscale (submodeling) finite element analysis in articular cartilage

Feel free to connect, collaborate, or check out my projects!

Pinned Loading

  1. febiosoftware/pyfebiofebiosoftware/pyfebioPublic

    A Python API for the FEBio Finite Element Solver

    Python 11 2

  2. CompOrthoBiomech/seg2meshCompOrthoBiomech/seg2meshPublic

    A toolkit for processing label volumes and triangular meshes and volume-mesh conversion.

    Python 2

  3. pyCellAnalystpyCellAnalystPublic

    pyCellAnalyst is a Python module for 3D reconstruction and deformation analysis of biological objects.

    Python 10 4

  4. lsmgridtracklsmgridtrackPublic

    A Python module to enable deformable image registration of 3D images with photobleached grids under mechanical loading.

    Python 3

  5. bioMultiScalebioMultiScalePublic

    Automates the multiscale finite element modelling process for tissue to cellular scales. The original implementation was aimed at usage in articular cartilage, but may be extended to other applicat…

    Python 1

  6. resonant_lsmresonant_lsmPublic

    Python