Simularium

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1. simularium-website simularium-websitePublic

   Front end website for the Simularium project, includes the Simularium viewer

   TypeScript 8 7

2. simulariumio simulariumioPublic

   Python package that converts simulation outputs to the format consumed by the Simularium viewer website

   Python 7 8

3. Cytosim CytosimPublic

   A fork of Cytosim, a cytoskeleton simulation engine (from https://gitlab.com/f-nedelec/cytosim)

   C++ 5

4. simularium-viewer simularium-viewerPublic

   NPM package to view Simularium trajectories in 3D

   TypeScript 3 3

5. subcell-pipeline subcell-pipelinePublic

   Simulation, analysis, and visualization functionality for subcellular models

   Python 2 1

6. metrics-calculator metrics-calculatorPublic

   [pre-release] Calculate plot metrics from spatial agent data

   Python 1