Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
 blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })(); GitHub - sing-group/S2P: S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. · GitHub
Skip to content

Repository files navigation

Logo S2P doilicenseBuild Status

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the official web page of the project for downloads and support.

Modules

This maven project is comprised of the following modules:

  • core: contains the default implementation API.
  • gui: contains several GUI components.
  • aibench: contains a GUI application based on AIBench framework (AIBench).

Building S2P

The final application can be built using the mvn install command. This command builds the three modules and generates the AIBench based application at s2p-aibench/targets.

In order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: createDistributables and createInstallers, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.

Building the portable versions

Windows/Linux portable versions can be built using the mvn install -PcreateDistributables command. This command generates the following four portable versions of S2P at s2p-aibench/target/builds: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.

Building the Windows installers

NSIS-based Windows installers can be built using the mvn install -PcreateInstallers command. This command generates the 32 and 64-bit versions at s2p-aibench/target/builds. Note that this profile is created to run under Linux environments with mingw-w64 and wine installed (it relies on i686-w64-mingw32-windres and i686-w64-mingw32-gcc to create some application files packed by NSIS).

Team

This project is an idea and is developed by:

Citing

If you are using S2P, please, cite us:

H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607

H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham

About

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

Topics

Resources

Stars

3 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages