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methylation_analysis

A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions

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, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
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var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
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, 'i');
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// Force GitHub README to respect dark mode
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style.textContent = '
.markdown-body {
color-scheme: dark light;
}
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.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
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})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
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, 'i');
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observer.observe(document.body, { childList: true, subtree: true });
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} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
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1 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
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var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
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observer.observe(document.body, { childList: true, subtree: true });
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} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
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1 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
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function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
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btn.click();
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// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
Resources
Readme
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1 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
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function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
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var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
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if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
style.textContent = '
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html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
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filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
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filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
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console.log('[Universal Dark Mode] Disabled');
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applyDarkMode();
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});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
GitHub - smk5g5/methylation_analysis · GitHub
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methylation_analysis
A bunch of Scripts that I use at my lab to do analysis of methylation tables generated by aligners like bismark etc up until the calculation of differentially methylated regions
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
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Watchers
1 watching
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0 forks
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