Pinned Loading

1. WSIToolsWSIToolsPublic

   Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

   Python 58 17

2. TumorStromaReactionTumorStromaReactionPublic

   Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

   Python 2

3. CellularCompositionCellularCompositionPublic

   Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and h…

   Python 5 1

4. WSIPenMarkingRemovalWSIPenMarkingRemovalPublic

   Remove pen-marking annotations on whole slide images(WSIs) for data achiving.

   Python 18 1

5. Re-stained_WSIs_RegistrationRe-stained_WSIs_RegistrationPublic

   Re-stained whole slide image alignment

   Python 37 11

6. MxIF_DAPI_ref_QCMxIF_DAPI_ref_QCPublic

   MxIF image quality checking

   Python 2