Sorger Lab @ Harvard Medical School

famplex Public Forked from johnbachman/famplex

Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

Python 18CC0-1.0 30 29 2 Updated Mar 26, 2026

pathwaymap.indra.bio Public

pathwaymap.indra.bio website

JavaScript 2BSD-2-Clause 1 0 7 Updated Jan 8, 2025

indra_pathway_map Public Forked from pvtodorov/indra_pathway_map

JavaScript 0BSD-2-Clause 5 0 0 Updated Jan 7, 2025

bioagents Public

Biological reasoning agents

Python 11BSD-2-Clause 15 7 2 Updated Apr 3, 2024

indra_assembly_paper Public

Automated assembly of molecular mechanisms at scale from text mining and curated databases

Jupyter Notebook 0 1 0 1 Updated Jan 23, 2023

indra_apps Public

Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021

earm Public Forked from clopezx/earm

Extrinsic Apoptosis Reaction Model

Python 1 17 3 1 Updated Oct 28, 2020

cycif Public

Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

MATLAB 10MIT 4 0 0 Updated May 5, 2019

cheminformatics_tools Public

General tools and scripts for cheminformatics analysis and processing

Python 1MIT 2 0 0 Updated Mar 18, 2019

DLSegmenter Public

Deep Learning based segmentation approach for tCyCIF images

0 0 0 0 Updated Dec 6, 2018

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Sorger Lab @ Harvard Medical School

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