Spinal Cord Toolbox

spinalcordtoolbox Public

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

Python 267LGPL-3.0 121 404 (33 issues need help) 6 Updated Aug 19, 2026

PAM50-normalized-metrics Public

Spinal cord morphometry in the PAM50 template space

Python 4MIT 0 21 6 Updated Aug 12, 2026

manual-correction Public

Scripts for the manual correction of spinal cord labels

Python 6MIT 0 24 3 Updated Jul 29, 2026

spinechart Public

Lifespan SpineChart project

Python 1 0 13 0 Updated Jul 10, 2026

sct_tutorial_data Public

Data and scripts for SCT's tutorials and courses

Shell 1 2 0 1 Updated Jun 25, 2026

doc-figures Public

Repository that contains most figures for spinalcordtoolbox documentation.

0 0 0 0 Updated May 27, 2026

report-ui Public

Generate the portable HTML interface for quality control reports for Spinal Cord Toolbox

TypeScript 1 1 5 (2 issues need help) 0 Updated Mar 2, 2026

nnUNet-neuropoly Public Forked from MIC-DKFZ/nnUNet

Python 1Apache-2.0 2,478 0 1 Updated Feb 11, 2026

PAM50 Public

MATLAB 5 1 21 4 Updated Oct 10, 2025

disc-labeling-benchmark Public

Development of a disc labeling benchmark on MRI images

Python 1LGPL-2.1 0 3 2 Updated Jul 4, 2025

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