Galaxy Tool wrappers

This repository contains a variety of different tools that can be installed and used inside the Galaxy.

Many tools are already included in the Galaxy Tool Shed, others needs some more love (see ToDo list).

Name		Name	Last commit message	Last commit date
EDeN		EDeN
R_mixed		R_mixed
antismash		antismash
augustus		augustus
bedtools		bedtools
biopython		biopython
bismark_wrapper		bismark_wrapper
blockbuster		blockbuster
blockclust		blockclust
chemicaltoolbox		chemicaltoolbox
crt		crt
datatypes/msa_datatypes		datatypes/msa_datatypes
deseq2		deseq2
diffbind		diffbind
dna_tools/twistdna		dna_tools/twistdna
file_manipulation		file_manipulation
gatk2		gatk2
general_mapping		general_mapping
genome_annotation_pipeline		genome_annotation_pipeline
glimmer3		glimmer3
glimmer_hmm		glimmer_hmm
graph_converter		graph_converter
graphclust		graphclust
homer		homer
illumina_methylation_analyser		illumina_methylation_analyser
image_processing		image_processing
iprscan		iprscan
iprscan5		iprscan5
macs2		macs2
mcl		mcl
meta_package_dependencies/chemicaltoolbox		meta_package_dependencies/chemicaltoolbox
methtools		methtools
miclip		miclip
minced		minced
molecule2gspan		molecule2gspan
orphan_tool_dependencies		orphan_tool_dependencies
perf		perf
prinseq		prinseq
proteomics/improviser		proteomics/improviser
repeat_masker		repeat_masker
rest_tool		rest_tool
rna_tools		rna_tools
sed_wrapper		sed_wrapper
segemehl		segemehl
sequence2gspan		sequence2gspan
snpeff		snpeff
statistics		statistics
test_repositories		test_repositories
text_processing		text_processing
trim_galore_wrapper		trim_galore_wrapper
visualise_annotation		visualise_annotation
workflows		workflows
.gitignore		.gitignore
README.md		README.md
TODO		TODO
create_tool_conf.py		create_tool_conf.py
kill_toolshed.sh		kill_toolshed.sh

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