Update CI/autofix tool versions to latest releases

[Copilot]

Updates Python dev tooling to latest stable versions per automated version check workflow.

Changes

• black: 25.11.0 → 25.12.0
• ruff: 0.14.7 → 0.14.10
• mypy: 1.19.0 → 1.19.1
• pytest: 9.0.1 → 9.0.2
• coverage: 7.12.0 → 7.13.0

Updated in both .github/workflows/autofix-versions.env and pyproject.toml via sync_tool_versions.py --apply to maintain pin synchronization.

Original prompt

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This section details on the original issue you should resolve

<issue_title>🔧 CI/Autofix Tool Updates Available</issue_title>
<issue_description>

Updates Available

Update Instructions

1. Update .github/workflows/autofix-versions.env with the new versions
2. Test locally:

source .github/workflows/autofix-versions.env
pip install "black==$BLACK_VERSION" "ruff==$RUFF_VERSION" "isort==$ISORT_VERSION" "docformatter==$DOCFORMATTER_VERSION" "mypy==$MYPY_VERSION" "pytest==$PYTEST_VERSION" "pytest-cov==$PYTEST_COV_VERSION" "coverage==$COVERAGE_VERSION"
black --check .
ruff check .
mypy src tests

3. Create a PR with the version updates
4. Ensure all CI checks pass before merging

Documentation

See .github/workflows/autofix-versions.env for the version file.

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This issue was automatically generated by the Tool Version Check workflow.
Last checked: 2025-12-22T08:01:33.195Z</issue_description>

Comments on the Issue (you are @copilot in this section)

• Fixes 🔧 CI/Autofix Tool Updates Available #51

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Automated Status Summary

Scope

• Scope section missing from source issue.

Tasks

• Tasks section missing from source issue.

Acceptance criteria

• Acceptance criteria section missing from source issue.

Head SHA: ca08de0
Latest Runs: ✅ success — Gate
Required: gate: ✅ success

Workflow / Job	Result	Logs
Agents PR meta manager	❔ in progress	View run
CI Autofix Loop	✅ success	View run
Gate	✅ success	View run
Health 40 Sweep	✅ success	View run
Health 44 Gate Branch Protection	✅ success	View run
Health 45 Agents Guard	✅ success	View run
Health 50 Security Scan	✅ success	View run
Maint 52 Validate Workflows	✅ success	View run
PR 11 - Minimal invariant CI	✅ success	View run
Selftest CI	✅ success	View run

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[github-actions]

Automated Status Summary

Head SHA: 98ee237
Latest Runs: ⏳ pending — Gate
Required contexts: Gate / gate, Health 45 Agents Guard / Enforce agents workflow protections
Required: core tests (3.11): ⏳ pending, core tests (3.12): ⏳ pending, docker smoke: ⏳ pending, gate: ⏳ pending

Workflow / Job	Result	Logs
(no jobs reported)	⏳ pending	—

Coverage Overview

• Coverage history entries: 1

Coverage Trend

Metric	Value
Current	77.97%
Baseline	0.00%
Delta	+77.97%
Minimum	70.00%
Status	✅ Pass

Updated automatically; will refresh on subsequent CI/Docker completions.

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Keepalive checklist

Scope

• Scope section missing from source issue.

Tasks

• Tasks section missing from source issue.

Acceptance criteria

• Acceptance criteria section missing from source issue.