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1. CICIPublic

   Collection of CI workflows for python repos.

   Python

2. ruggleslab/phosphodiscoruggleslab/phosphodiscoPublic

   Forked from liliblu/phosphodisco

   Jupyter Notebook 4 1

3. BADAS_Nextflow_TutorialBADAS_Nextflow_TutorialPublic

   Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology

   Nextflow 7 5

4. Awesome_Malaria_Parasite_Imaging_DatasetsAwesome_Malaria_Parasite_Imaging_DatasetsPublic

   This repository is an attempt to list all malaria parasite imaging datasets (blood smears). Contributions welcome!

   61 16

5. 3-nextflow-patterns3-nextflow-patternsPublic

   This repo contains code snippets and markdown illustrating 5 useful Nextflow patterns.

   Nextflow 3

6. singularity_containerssingularity_containersPublic

   SingularityHub container definition for a containers that I need for my workflows that aren't already available on biocontainers etc.