Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
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Oct 19, 2020 - HTML
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ancom-bc
Here are 8 public repositories matching this topic...
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
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Jul 8, 2022 - HTML
Reproducible computational analysis of gut microbiome dynamics following fecal microbiota transplantation for recurrent C. difficile infection.
pythonlinuxbashbioinformaticsmicrobiomedada2qiime216s-rrnalongitudinal-analysisancom-bcunifracfecal-microbiota-transplantation
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Aug 28, 2026 - Shell
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
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Jan 4, 2022 - HTML
Reproducible bioinformatic pipelines, QIIME 2 workflows, and R scripts for analyzing the impact of cecotrophy prevention on the cecal microbiota of guinea pigs (Cavia porcellus).
reproducible-researchbioinformatics-pipelinemicrobiomephyloseqguinea-pigmicrobial-ecologyr-statsdada2amplicon-sequencingqiime216s-rrnametacoderlefseancom-bcdifferential-abundancegut-microbiotacavia-porcellus
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Aug 27, 2026 - R
A quantitative 16S rRNA amplicon sequencing pipeline leveraging the QIIME 2 framework, DADA2 ASV inference, and ANCOM-BC to resolve complex microbial ecologies and pinpoint taxonomic differential abundance.
computational-biologymetagenomicsphylogeneticsmicrobiomemicrobial-ecologydada2amplicon-sequencingqiime216s-rrnaamplicon-sequence-variantsancom-bcunifracdysbiosishost-microbiome
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Aug 4, 2026
QIIME 2-based pipeline for tracking microbial community succession, taxonomic profiling, and calculating chronological ecological diversity metrics.
bioinformaticscomputational-biologymetagenomicsmicrobiologymicrobiomebiomarker-discoverymicrobial-ecologydada2asvamplicon-sequencingmicrobiome-dataqiime216s-rrnacommunity-assemblyancom-bcmicrobial-successionecological-diversity
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May 6, 2026 - TeX
Harmonized cross-species 16S rRNA comparison of the gut microbiota in EAE mice and human multiple sclerosis
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Jul 13, 2026 - Python
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