Small, fast, fully differentiable antibody Fv structure predictor in JAX. ~0.76M parameters, matches IgFold on CDR-H3, folds an Fv in ~0.8s on CPU.
abcat is a Python CLI/library tool that uses ANARCII as a core dependency to perform integrated analysis of antibody heavy-chain and light-chain sequences, covering both variable domains (VH, VL) and constant domains (CH1, CH2, CH3, CL).
In Silico Antibody Affinity Maturation (open source reproduction and extension of AurekaBio's Aurabind)
Automated Nextflow pipelines for high-throughput molecular dynamics screening of antibody-antigen complexes
Aligned, sequence-validated atlas of engineered IgG Fc variants: 73 records across IgG1-IgG4 in EU numbering, interface contacts measured from deposited coordinates, generated PyMOL scripts and a no-install browser viewer.
Adaptive therapeutic optimization workbench: a scientist-governed loop that learns from each experimental round and proposes the next batch. Functional prototype; laboratory simulated.
Antibody lead-optimisation pipeline: AbLang2 masked-marginal scan, multi-mutant assembly and design-brief constraints for a cetuximab scFv against EGFR domain III.
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