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bgen

Here are 8 public repositories matching this topic...

snputils

AI-sandbox / snputils

Python toolkit for fast genotype I/O, ancestry analysis, population-genetics statistics, genotype QC, GWAS, and visualization

python bioinformatics gwas genomics genetics popgen plink vcf ancestry population-genetics bcf bgen pgen genotype-qc

Updated Sep 10, 2026
Python

zhanxw / seqminer

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

workflow annotation sequencing next-generation-sequencing plink vcf meta-analysis bcf tabix bgen

Updated Feb 23, 2026
C

roshchupkin / pybgen

Light and fast pure python parser for bgen format (v.1.1; 1.2; 1.3)

python parser bioinformatics gwas ukbiobank bgen ukbb

Updated Jan 17, 2018
Python

CoreArray / gds2bgen

R package for the format conversion from bgen to gds

gds bgen

Updated Jun 16, 2025
C++

huntdatacenter / rbgen

r genetics hacktoberfest bgen saige rbgen

Updated Jan 22, 2022

carbocation / bgen

BGEN file format reader for parsing UK Biobank and other genotype data in Go

golang genomics ukbiobank bgen

Updated Aug 26, 2026
Go

gbadedata / imputation-calibration-benchmark

Dual-condition genotype imputation benchmark on 1000 Genomes chr20: is Beagle's DR2 calibrated, and does calibration survive an ancestry-mismatched reference panel? plink2 + Beagle 5.5 with abstention analysis, bootstrap CIs, and exact QC accounting.

python benchmark bioinformatics genomics reproducible-research vcf calibration population-genetics statistical-genetics beagle bgen health-equity genotype-imputation plink2 1000-genomes

Updated Sep 5, 2026
Python

jpfeuffer / bgen

Reference implementation of the bgen format. Adapted for maintainability from https://github.com/gavinband/bgen

bioinformatics genetics bgen

Updated May 20, 2026
C++

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